tomesphere

com.tomesphere/tomesphereVersion 0.1.0

Search 8.5M scientific papers with LLM TLDRs, citations, linked entities, figures, and full text.

Status

Responds359 msNov 14, 2026, 14:19 UTCAnswered our handshake without sign-in.

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Last checked: Nov 14, 2026, 14:19 UTC
Latency: 359 ms
Remotes responding: 1 of 1
Sign-in: No sign-in
Hosting: Hosted outside the EU (detected)
Registry data as of: Nov 14, 2026, 22:14 UTC

Data from the official MCP Registry, checked by run.zero. How we check

Connect

Streamable HTTP

https://mcp.tomesphere.com/api/mcpResponds359 msNov 14, 2026, 14:19 UTC

No sign-in

Claude Code

claude mcp add --transport http tomesphere https://mcp.tomesphere.com/api/mcp

Claude Desktop and claude.ai

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Settings > Connectors > Add custom connector
Name: tomesphere
Remote MCP server URL: https://mcp.tomesphere.com/api/mcp

Cursor

{
  "mcpServers": {
    "tomesphere": {
      "url": "https://mcp.tomesphere.com/api/mcp"
    }
  }
}

VS Code

code --add-mcp '{"name":"tomesphere","type":"http","url":"https://mcp.tomesphere.com/api/mcp"}'

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Tools

9 tools

Tools of tomesphere
	Description		Read-only	Idempotent	Open world
`citations`Get papers that cite the given paper (who refers to this work). Use when the user asks 'who cites X', 'what's the impact', or wants follow-up work. Note: 2024+ citation coverage is sparse; indexing in progress.	Get papers that cite the given paper (who refers to this work). Use when the user asks 'who cites X', 'what's the impact', or wants follow-up work. Note: 2024+ citation coverage is sparse; indexing in progress.	Not declared	Yes	Not declared	Yes
`get_entities`Get the biomedical entities linked to a paper: genes, proteins, chemicals, diseases, species, mutations, cell lines, and clinical-trial (NCT) IDs. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.	Get the biomedical entities linked to a paper: genes, proteins, chemicals, diseases, species, mutations, cell lines, and clinical-trial (NCT) IDs. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.	Not declared	Yes	Not declared	Yes
`get_figures`Get a paper's real figure images — URLs, labels, and captions. Most biomedical papers have figures; arXiv papers often don't. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.	Get a paper's real figure images — URLs, labels, and captions. Most biomedical papers have figures; arXiv papers often don't. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.	Not declared	Yes	Not declared	Yes
`get_full_text`Fetch a paper's full body text as Markdown (methods, results, protocols, inline tables) — use for deep questions the abstract can't answer. Accepts an arXiv ID (2401.12345), a PMC ID (PMC5339222), or a bioRxiv/medRxiv DOI (10.1101/…).	Fetch a paper's full body text as Markdown (methods, results, protocols, inline tables) — use for deep questions the abstract can't answer. Accepts an arXiv ID (2401.12345), a PMC ID (PMC5339222), or a bioRxiv/medRxiv DOI (10.1101/…).	Not declared	Yes	Not declared	Yes
`get_paper`Fetch a paper's full metadata: title, authors, year, abstract, TLDR (LLM-generated), key findings, citation count, GitHub repos, HuggingFace models/datasets, videos, peer reviews, and links. Accepts an arXiv ID (e.g. '2401.12345' or '1706.03762v5') or an OpenAlex Work ID (e.g. 'W4390723197'). Use when the user names a specific paper or pastes an arXiv link.	Fetch a paper's full metadata: title, authors, year, abstract, TLDR (LLM-generated), key findings, citation count, GitHub repos, HuggingFace models/datasets, videos, peer reviews, and links. Accepts an arXiv ID (e.g. '2401.12345' or '1706.03762v5') or an OpenAlex Work ID (e.g. 'W4390723197'). Use when the user names a specific paper or pastes an arXiv link.	Not declared	Yes	Not declared	Yes
`get_structure`Resolve a gene/protein name (e.g. 'TP53', 'CD44') or UniProt accession to its 3D structure — returns the UniProt accession + AlphaFold model URL (and PDB when available). Great for a gene named in a paper's entities.	Resolve a gene/protein name (e.g. 'TP53', 'CD44') or UniProt accession to its 3D structure — returns the UniProt accession + AlphaFold model URL (and PDB when available). Great for a gene named in a paper's entities.	Not declared	Yes	Not declared	Yes
`references`Get the papers that this paper cites (its bibliography). Use when the user asks 'what does X cite' or 'show me the references'.	Get the papers that this paper cites (its bibliography). Use when the user asks 'what does X cite' or 'show me the references'.	Not declared	Yes	Not declared	Yes
`search_papers`Search 8.5 million academic papers (arXiv + biomedical: PMC / bioRxiv / medRxiv, all disciplines) by topic, keyword, author, or linked entity (gene / protein / disease). Each hit returns id, title, TLDR, type, and links. Use to find papers about a topic, e.g. 'transformer efficiency' or 'CRISPR base editing'.	Search 8.5 million academic papers (arXiv + biomedical: PMC / bioRxiv / medRxiv, all disciplines) by topic, keyword, author, or linked entity (gene / protein / disease). Each hit returns id, title, TLDR, type, and links. Use to find papers about a topic, e.g. 'transformer efficiency' or 'CRISPR base editing'.	Not declared	Yes	Not declared	Yes
`similar_papers`Find papers semantically similar to a given paper using SPECTER2 embeddings (trained on scientific-citation triplets). Returns nearest neighbors with TLDR. Use when the user wants 'papers like X' or 'what's adjacent to this work'.	Find papers semantically similar to a given paper using SPECTER2 embeddings (trained on scientific-citation triplets). Returns nearest neighbors with TLDR. Use when the user wants 'papers like X' or 'what's adjacent to this work'.	Not declared	Yes	Not declared	Yes

Details

Registry status: Active
Published: Jul 6, 2026
Updated: Jul 6, 2026
Website: https://tomesphere.com/mcp⁠ (opens in a new tab)
Repository: Not given
Categories (suggested): AI modelsSuggested categories are assigned automatically from the registry text and may be wrong. Verified operators can correct them.
GDPR: Not declared

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